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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 69ATAC-seq
  • 55total RNA-seq
  • 47WGBS
  • 28ChIP-seq
  • 6Hi-C
  • 6MeRIP-seq
  • 6RRBS
  • 2Capture-C
  • 2DNase-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1RNA microarray
Assay category
  • 71DNA accessibility
  • 55Transcription
  • 53DNA methylation
  • 28DNA binding
  • 63D chromatin structure
Target of assay
  • 28control
  • 3histone
  • 3histone modification
  • 3nucleotide modification
  • 2broad histone mark
  • 1narrow histone mark
Date released
  • 80May, 2022
  • 52February, 2023
  • 17May, 2021
  • 16September, 2020
  • 12August, 2017
  • 10October, 2019
  • 6February, 2021
  • 6July, 2019
  • 6November, 2020
  • 4November, 2019
  • 3August, 2021
  • 3December, 2017
  • 3October, 2022
  • 2June, 2019
  • 1December, 2019
  • 1March, 2020
  • 1May, 2019
Available data
  • 317bam
  • bigWig
  • 257fastq
  • 156tsv
  • 151bed narrowPeak
  • 80zippedFastqFolder
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6hic
  • 5bedpe bed3+
  • 3cool
  • 2hdf5
  • 1tar
Organism
  • 222Homo sapiens
Biosample type
  • 175primary cell
  • 29cell line
  • 15tissue
  • 4in vitro differentiated cells
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 142HPAP
  • 81AMP
Genome assembly (visualization)
  • 26hg19
  • 2GRCh38
Lab
  • 142Klaus Kaestner, Upenn
  • 75AMP-T2D consortium
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 34inconsistent ontology term
  • 5audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

223 results

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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
MeRIP-seq
RRBS
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell22423161
pancreatic beta cell13111661
endothelial cell of umbilical vein52
pancreatic acinar cell41
epithelial cell of proximal tubule21
cell line
EndoC_BH11721621
tissue
pigmented layer of retina122
renal glomerulus1
in vitro differentiated cells
Hepatic endoderm2
hepatocyte1
pancreatic PP cell1
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