Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 75ATAC-seq
  • 64single cell RNA-seq
  • 49total RNA-seq
  • 13ChIP-seq
  • 6snATAC-seq
  • 4RRBS
  • 3snDrop-seq
  • 2DNase-seq
  • 2RNA microarray
  • 2STARR-seq
  • 2pCHi-C
  • 1Hi-C
Assay category
  • 113Transcription
  • 83DNA accessibility
  • 13DNA binding
  • 4DNA methylation
  • 13D chromatin structure
Target of assay
  • 12control
  • 1RNA binding protein
  • 1transcription factor
Date released
  • 130August, 2021
  • 47September, 2023
  • 14May, 2023
  • 8February, 2021
  • 8October, 2019
  • 5April, 2019
  • 4July, 2019
  • 3December, 2019
  • 2March, 2020
  • 1June, 2019
  • 1May, 2019
Available data
  • 183bed narrowPeak
  • 144bam
  • bigWig
  • 104bigBed narrowPeak
  • 78bed bed3+
  • 78bed broadPeak
  • 78bigBed broadPeak
  • 64xls
  • 62txt
  • 24tsv
  • 5csv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 1hic
Organism
  • 223Homo sapiens
Biosample type
  • 208tissue
  • 8primary cell
  • 7cell line
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 176AMP
  • 47KPMP
Genome assembly (visualization)
  • 75GRCh38
  • 5hg19
Lab
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 32AMP-T2D consortium
  • 2Bing Ren, UCSD
Audit category:
  • 8inconsistent ontology term
  • 7audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

223 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney7564497611
kidney (Cortex-Medulla)1
kidney (cortex)1
kidney (medulla)1
kidney interstitium1
primary cell
epithelial cell of proximal tubule21
kidney epithelial cell11
kidney glomerular epithelial cell1
kidney tubule cell1
renal cortical epithelial cell1
cell line
HEK293T2
RCC 7860 vector11
RCC 7860 HIF1a re-expression1
RCC 7860 HIF2a over-expression1
RCC 7860 VHL1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego