Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 18ChIP-seq
  • 6ATAC-seq
  • 4Hi-C
  • 3total RNA-seq
Assay category
  • 18DNA binding
  • 6DNA accessibility
  • 43D chromatin structure
  • 3Transcription
Target of assay
  • 17control
  • 1histone
  • 1histone modification
  • 1narrow histone mark
Date released
  • 17October, 2019
  • 6February, 2021
  • 4July, 2019
  • 3February, 2020
  • 1May, 2019
Available data
  • 114bam
  • 92bed narrowPeak
  • bigWig
  • 84bigBed narrowPeak
  • 36bed bed3+
  • 36bed broadPeak
  • 36bigBed broadPeak
  • 7tsv
  • 1bed bedMethyl
  • 1bigBed bedMethyl
Organism
  • 31Homo sapiens
Biosample type
  • 31tissue
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 31AMP
Genome assembly (visualization)
  • 6GRCh38
  • 6hg19
Lab
  • 31AMP-T2D consortium
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

31 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve111
tibial artery51
gastrocnemius medialis41
distal epiphysis of femur1
distal epiphysis of humerus1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego