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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 120ChIP-seq
  • 30total RNA-seq
  • 4WGBS
  • 3Hi-C
  • 3pCHi-C
  • 2ATAC-seq
  • 2RRBS
  • 2STARR-seq
  • 1DNase-seq
  • 1single cell RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 120DNA binding
  • 31Transcription
  • 6DNA methylation
  • 33D chromatin structure
  • 3DNA accessibility
  • 1DNA sequencing
Target of assay
  • 95control
  • 20histone
  • 20histone modification
  • 12broad histone mark
  • 8narrow histone mark
  • 5transcription factor
  • 2RNA binding protein
  • 1recombinant protein
Date released
  • 47November, 2017
  • 36August, 2017
  • 24May, 2020
  • 20May, 2022
  • 18August, 2021
  • 13December, 2017
  • 3February, 2021
  • 2July, 2019
  • 2March, 2020
  • 1December, 2018
  • 1February, 2020
  • 1November, 2018
  • 1October, 2019
Available data
  • 681bam
  • bigWig
  • 465fastq
  • 441bed narrowPeak
  • 358bigBed narrowPeak
  • 174tsv
  • 86tagAlign
  • 63bed broadPeak
  • 63bigBed broadPeak
  • 13bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 3tar
  • 2bedpe bed3+
  • 2hic
  • 1bed bed3
  • 1csv
  • 1hdf5
  • 1vcf
Organism
  • 169Homo sapiens
Biosample type
  • 96tissue
  • 69cell line
  • 3primary cell
  • 1in vitro differentiated cells
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 169AMP
Genome assembly (visualization)
  • 8hg19
  • 3GRCh38
Lab
  • 132AMP-T2D consortium
  • 20Karen Mohlke, UNC
  • 17Bing Ren, UCSD
Audit category:
  • 1inconsistent ontology term
  • 1inconsistent replicate
Audit category:
  • 1missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

169 results

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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
pCHi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver632031111
right lobe of liver3111
cell line
HepG252922121
primary cell
hepatocyte11
Liver fetal (hepatocyte)1
in vitro differentiated cells
hepatocyte1
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