Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
206
candidate regulatory elements
149
target gene predictions
112
chromatin state
51
gene expression
33
differential activity
24
accessible chromatin
17
eQTL
14
binding sites
11
histone modifications
10
variant allelic effects
5
Fine-mapped variants
2
sQTL
2
variant to gene
Date released
321
September, 2022
127
February, 2021
47
March, 2023
39
May, 2021
14
November, 2021
13
June, 2020
11
March, 2020
10
February, 2024
10
January, 2021
8
August, 2021
7
August, 2018
6
January, 2022
5
August, 2017
4
May, 2020
4
October, 2022
3
March, 2024
2
February, 2020
2
January, 2020
1
April, 2019
1
February, 2023
1
January, 2018
Available data
491
bed bed3+
106
bed bed9
79
tsv
bigWig
14
bigBed narrowPeak
3
bam
3
bed gappedPeak
3
csv
3
xls
2
bigBed bed9
Organism
636
Homo sapiens
Biosample type
387
tissue
129
cell line
117
primary cell
3
in vitro differentiated cells
Organ
783
epithelium
616
kidney
445
brain
413
connective tissue
359
musculature of body
302
lung
278
intestine
238
vasculature
235
heart
230
limb
220
pancreas
218
bodily fluid
213
embryo
207
blood
199
skin of body
181
blood vessel
171
large intestine
143
extraembryonic component
135
liver
114
stomach
84
adipose tissue
84
mammary gland
82
small intestine
82
uterus
79
bone element
78
prostate gland
73
eye
71
placenta
67
adrenal gland
66
artery
64
penis
62
lymph node
61
ureter
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
610
AMP
14
ENCODE
10
T1D
2
community
Genome assembly (visualization)
540
hg19
130
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
636 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
gene expression
differential activity
accessible chromatin
eQTL
binding sites
histone modifications
variant allelic effects
Fine-mapped variants
sQTL
variant to gene
tissue
stomach
40
21
19
1
3
1
1
lung
33
17
16
1
1
left lung
26
13
13
right lung
22
11
11
1
islet of Langerhans
1
3
11
2
13
2
1
1
2
2
2
+ See 9 more…
cell line
A549
21
19
18
1
2
1
EndoC_BH1
1
8
3
7
1
IMR-90
2
2
1
1
2
1
PC-9
2
2
1
1
1
1
WI38
5
1
1
+ See 9 more…
primary cell
fibroblast of lung
6
4
4
2
pancreatic ductal cell
3
3
3
1
1
2
1
pancreatic acinar cell
3
3
3
1
pancreatic delta cell
3
3
3
1
pancreatic alpha cell
2
3
3
1
+ See 19 more…
in vitro differentiated cells
pancreatic ductal cell
3
See all biosamples
Download