Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
179
candidate regulatory elements
179
target gene predictions
95
chromatin state
61
gene expression
34
differential activity
28
accessible chromatin
23
eQTL
16
binding sites
15
histone modifications
14
variant allelic effects
11
Fine-mapped variants
2
caQTL
2
sQTL
2
variant to gene
Date released
258
September, 2022
130
February, 2021
73
February, 2024
47
March, 2023
41
May, 2021
18
March, 2020
12
June, 2020
11
November, 2021
10
January, 2021
9
August, 2021
9
May, 2020
8
February, 2020
7
August, 2018
6
August, 2017
6
January, 2022
4
March, 2024
4
October, 2022
2
January, 2020
2
May, 2019
1
April, 2019
1
February, 2023
1
January, 2018
1
October, 2019
Available data
516
bed bed3+
92
tsv
88
bed bed9
bigWig
14
bigBed narrowPeak
5
bigBed bed9
3
bam
3
bed gappedPeak
3
csv
3
xls
Organism
661
Homo sapiens
Biosample type
413
tissue
128
primary cell
115
cell line
5
in vitro differentiated cells
Organ
783
epithelium
616
kidney
445
brain
413
connective tissue
359
musculature of body
302
lung
278
intestine
238
vasculature
235
heart
230
limb
220
pancreas
218
bodily fluid
213
embryo
207
blood
199
skin of body
181
blood vessel
171
large intestine
143
extraembryonic component
135
liver
114
stomach
84
adipose tissue
84
mammary gland
82
small intestine
82
uterus
79
bone element
78
prostate gland
73
eye
71
placenta
67
adrenal gland
66
artery
64
penis
62
lymph node
61
ureter
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
14
bronchus
13
breast
13
pituitary gland
11
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
638
AMP
11
ENCODE
10
T1D
2
community
Genome assembly (visualization)
559
hg19
168
GRCh38
files.file_type!
bigWig
BIOSAMPLE
TYPE
661 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
chromatin state
gene expression
differential activity
accessible chromatin
eQTL
binding sites
histone modifications
variant allelic effects
Fine-mapped variants
caQTL
sQTL
variant to gene
tissue
muscle of arm
33
16
16
1
muscle of leg
27
14
15
1
muscle of back
28
13
13
islet of Langerhans
1
3
11
2
13
2
1
1
2
2
2
body of pancreas
8
5
4
2
1
1
3
+ See 26 more…
primary cell
pancreatic ductal cell
3
3
3
1
1
2
1
pancreatic acinar cell
3
3
3
1
pancreatic delta cell
3
3
3
1
pancreatic alpha cell
2
3
3
1
pancreatic beta cell
2
3
3
1
+ See 22 more…
cell line
HeLa-S3
5
55
3
1
EndoC_BH1
1
8
3
7
1
LHCN-M2
2
1
1
1
1
1
A673
2
2
1
Panc1
2
2
1
+ See 6 more…
in vitro differentiated cells
pancreatic ductal cell
3
myotube
1
1
See all biosamples
Download