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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 12ChIP-seq
  • 6Hi-C
  • 5RRBS
  • 2snATAC-seq
  • 2total RNA-seq
  • 1pCHi-C
  • 1single cell RNA-seq
Assay category
  • 12DNA binding
  • 63D chromatin structure
  • 5DNA methylation
  • 3Transcription
  • 2DNA accessibility
Target of assay
  • 6control
  • 6histone
  • 6histone modification
  • 4broad histone mark
  • 2narrow histone mark
Date released
  • 13August, 2017
  • 5July, 2019
  • 3March, 2020
  • 2February, 2020
  • 2June, 2019
  • 2May, 2022
  • 1July, 2025
  • 1May, 2019
Available data
  • bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 35bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 10tsv
  • 4bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1tbi
  • 1txt
Organism
  • 28Homo sapiens
Biosample type
  • 26tissue
  • 3primary cell
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 29musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 29AMP
Genome assembly (visualization)
  • 6hg19
  • 1GRCh38
Lab
  • 28AMP-T2D consortium
  • 1Stephen Parker, UMich
Audit category:
  • 1audit script error
  • 1inconsistent ontology term
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

29 results

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Clear Filters
ChIP-seq
Hi-C
RRBS
snATAC-seq
total RNA-seq
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue9421
gastrocnemius medialis41
psoas muscle21
left ventricle myocardium1
muscle of leg1
primary cell
skeletal muscle cell11
skeletal muscle satellite cell1
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