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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
111
ATAC-seq
73
total RNA-seq
48
ChIP-seq
47
WGBS
11
snATAC-seq
10
MeRIP-seq
8
Hi-C
2
Capture-C
2
RRBS
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
122
DNA accessibility
73
Transcription
49
DNA methylation
48
DNA binding
8
3D chromatin structure
Target of assay
53
control
9
histone
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
104
May, 2022
56
February, 2023
24
November, 2019
21
August, 2017
18
May, 2021
16
September, 2020
11
October, 2018
10
November, 2020
9
October, 2019
8
January, 2021
6
February, 2021
6
September, 2017
5
March, 2019
4
August, 2021
4
July, 2018
4
March, 2020
3
October, 2022
2
July, 2019
1
August, 2022
1
February, 2020
1
May, 2019
Available data
552
bam
bigWig
417
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
312
Homo sapiens
Biosample type
154
primary cell
124
tissue
35
cell line
1
in vitro differentiated cells
Organ
314
pancreas
223
kidney
220
epithelium
169
heart
149
liver
101
bone element
78
vasculature
77
blood vessel
71
connective tissue
56
artery
53
eye
43
brain
36
adipose tissue
30
limb
22
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
7
embryo
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
144
AMP
142
HPAP
28
T1D
Genome assembly (visualization)
51
hg19
24
GRCh38
Lab
142
Klaus Kaestner, Upenn
104
AMP-T2D consortium
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent ontology term
4
audit script error
files.file_type!
bigWig
organ_slims!
pericardium
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
314 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell
22
42
6
31
1
pancreatic beta cell
13
11
6
16
1
pancreatic acinar cell
4
1
tissue
islet of Langerhans
55
18
13
7
4
3
1
pancreas
1
3
4
1
1
1
body of pancreas
1
9
endocrine pancreas
2
cell line
EndoC_BH1
17
2
6
1
2
1
Panc1
6
in vitro differentiated cells
pancreatic PP cell
1
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