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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 111ATAC-seq
  • 73total RNA-seq
  • 57ChIP-seq
  • 47WGBS
  • 11snATAC-seq
  • 10MeRIP-seq
  • 8Hi-C
  • 2Capture-C
  • 2RRBS
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1pCHi-C
Assay category
  • 122DNA accessibility
  • 73Transcription
  • 57DNA binding
  • 49DNA methylation
  • 83D chromatin structure
Target of assay
  • 53control
  • 9histone
  • 9histone modification
  • 5broad histone mark
  • 5nucleotide modification
  • 4narrow histone mark
Date released
  • 104May, 2022
  • 56February, 2023
  • 29August, 2017
  • 24November, 2019
  • 18May, 2021
  • 16September, 2020
  • 11October, 2018
  • 10November, 2020
  • 10October, 2019
  • 8January, 2021
  • 6February, 2021
  • 6September, 2017
  • 5March, 2019
  • 4August, 2021
  • 4July, 2018
  • 4March, 2020
  • 3October, 2022
  • 2July, 2019
  • 1August, 2022
  • 1February, 2020
  • 1May, 2019
Available data
  • 689bam
  • bigWig
  • 471fastq
  • 417tsv
  • 214bed narrowPeak
  • 91bigBed narrowPeak
  • 80zippedFastqFolder
  • 29bed bed3+
  • 21bed broadPeak
  • 19tagAlign
  • 7bedpe bed3+
  • 7bigBed broadPeak
  • 7hic
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 6txt
  • 3cool
  • 1bedpe
  • 1hdf5
Organism
  • 321Homo sapiens
Biosample type
  • 154primary cell
  • 132tissue
  • 36cell line
  • 1in vitro differentiated cells
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 153AMP
  • 142HPAP
  • 28T1D
Genome assembly (visualization)
  • 51hg19
  • 24GRCh38
Lab
  • 142Klaus Kaestner, Upenn
  • 113AMP-T2D consortium
  • 51Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 2Mark McCarthy, Oxford
  • 1Maike Sander, UCSD
Audit category:
  • 28inconsistent ontology term
  • 4audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

323 results

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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
Capture-C
RRBS
CRISPR genome editing followed by sgRNA sequencing
pCHi-C
primary cell
pancreatic alpha cell22426311
pancreatic beta cell13116161
pancreatic acinar cell41
tissue
islet of Langerhans5518217431
pancreas134111
body of pancreas19
endocrine pancreas2
cell line
EndoC_BH11726121
Panc17
in vitro differentiated cells
pancreatic PP cell1
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