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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 43ATAC-seq
  • 23ChIP-seq
  • 6single cell RNA-seq
  • 3Hi-C
  • 3total RNA-seq
  • 1RRBS
  • 1WGBS
  • 1pCHi-C
Assay category
  • 43DNA accessibility
  • 23DNA binding
  • 9Transcription
  • 33D chromatin structure
  • 2DNA methylation
Target of assay
  • 20control
  • 3histone
  • 3histone modification
  • 2broad histone mark
  • 1narrow histone mark
Date released
  • 35February, 2023
  • 11May, 2019
  • 11October, 2019
  • 10February, 2021
  • 6August, 2021
  • 3February, 2020
  • 3March, 2020
  • 2July, 2019
Available data
  • 185bam
  • bigWig
  • 133bed narrowPeak
  • 83bigBed narrowPeak
  • 68tsv
  • 17bed broadPeak
  • 17bigBed broadPeak
  • 13bed bed3+
  • 6fastq
  • 6tagAlign
  • 3hic
  • 2bed bedMethyl
  • 2bedpe bed3+
  • 2bigBed bedMethyl
  • 2hdf5
  • 1tar
Organism
  • 81Homo sapiens
Biosample type
  • 63tissue
  • 10cell line
  • 8primary cell
Organ
  • 323pancreas
  • 223epithelium
  • 223kidney
  • 169heart
  • 169liver
  • 114connective tissue
  • 101bone element
  • 81vasculature
  • 80blood vessel
  • 66adipose tissue
  • 64brain
  • 56artery
  • 55eye
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 14blood
  • 14bodily fluid
  • 12nerve
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 81AMP
Genome assembly (visualization)
  • 43GRCh38
  • 12hg19
Lab
  • 81AMP-T2D consortium
Audit category:
  • 1audit script error
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  • bigWig
BIOSAMPLE
ASSAY

81 results

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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
RRBS
WGBS
pCHi-C
tissue
coronary artery3521
aorta24111
tibial artery51
ascending aorta31
thoracic aorta4
cell line
smooth muscle cell of the coronary artery82
primary cell
endothelial cell of umbilical vein52
choroid plexus epithelial cell1
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