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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 263single cell RNA-seq
  • 249total RNA-seq
  • 87RNA microarray
  • 10MeRIP-seq
  • 5STARR-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1CRISPRi RNA-seq
  • 1ChIP-seq
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1snATAC-seq
Assay category
  • 516Transcription
  • 1DNA accessibility
  • 1DNA binding
Target of assay
  • 6control
  • 5nucleotide modification
Date released
  • 171August, 2021
  • 105February, 2021
  • 95February, 2023
  • 60May, 2022
  • 56September, 2020
  • 47September, 2023
  • 25February, 2020
  • 14October, 2019
  • 10April, 2020
  • 10November, 2020
  • 7May, 2021
  • 5December, 2019
  • 4July, 2018
  • 4March, 2023
  • 4May, 2023
  • 2March, 2020
  • 2May, 2020
  • 1August, 2017
  • 1November, 2018
  • 1October, 2022
  • 1September, 2018
Available data
  • 1478tsv
  • 1342bam
  • bigWig
  • 373fastq
  • 157txt
  • 52zippedFastqFolder
  • 8csv
  • 7tagAlign
  • 6bed broadPeak
  • 6bed narrowPeak
  • 6bigBed narrowPeak
  • 2bed bed3+
Organism
  • 616Homo sapiens
Biosample type
  • 406tissue
  • 182primary cell
  • 24cell line
  • 11in vitro differentiated cells
  • 2stem cell
Organ
  • 120kidney
  • 96heart
  • 88bone element
  • 85pancreas
  • 63epithelium
  • 33liver
  • 19eye
  • 12brain
  • 10lung
  • 9blood vessel
  • 9vasculature
  • 8connective tissue
  • 4adipose tissue
  • 4artery
  • 4skeleton
  • 3limb
  • 3musculature of body
  • 1nerve
  • 1spinal cord
Project
  • 380AMP
  • 177HPAP
  • 47KPMP
  • 10LungMap
  • 7T1D
  • 4community
Genome assembly (visualization)
  • 1GRCh38
  • 1hg19
Lab
  • 265AMP-T2D consortium
  • 177Klaus Kaestner, Upenn
  • 60Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 17Kyle Gaulton, UCSD
  • 15Bing Ren, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 4Anna Gloyn, Oxford
Audit category:
  • 96inconsistent ontology term
  • 9audit script error
files.file_type!
  • bigWig
replicates.library.nucleic_acid_term_name!
  • DNA
BIOSAMPLE
ASSAY

625 results

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Clear Filters
single cell RNA-seq
total RNA-seq
RNA microarray
MeRIP-seq
STARR-seq
snDrop-seq
CRISPR RNA-seq
CRISPR genome editing followed by sgRNA sequencing
CRISPRi RNA-seq
ChIP-seq
MPRA
shRNA RNA-seq
siRNA RNA-seq
snATAC-seq
tissue
kidney6449
bone element84
islet of Langerhans324
liver120
heart left ventricle18
primary cell
Langerhans cell85
pancreatic alpha cell42
exocrine cell39
pancreatic beta cell11
pancreatic cell2
cell line
HepG292
EndoC_BH161
EndoC-BH111
HEK293T2
MIN61
in vitro differentiated cells
embryonic stem cell5
cardiomyocytes (cardiac muscle cell)2
immature adipocyte2
adipocyte1
preadipocyte1
stem cell
SB Ad3.111
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