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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 480ChIP-seq
  • 395ATAC-seq
  • 83snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 29Hi-C
  • 21RRBS
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3DNase-seq
  • 2HiChIP
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 481DNA accessibility
  • 480DNA binding
  • 80DNA methylation
  • 293D chromatin structure
  • 1DNA sequencing
Target of assay
  • 314control
  • 148histone
  • 148histone modification
  • 74broad histone mark
  • 74narrow histone mark
  • 18transcription factor
  • 8RNA binding protein
  • 1recombinant protein
Date released
  • 138August, 2017
  • 120May, 2022
  • 107February, 2023
  • 101August, 2021
  • 93October, 2019
  • 89May, 2021
  • 79May, 2020
  • 72November, 2017
  • 59February, 2021
  • 42March, 2020
  • 30November, 2019
  • 29October, 2018
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 16January, 2021
  • 15April, 2019
  • 11May, 2023
  • 9April, 2020
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 7November, 2018
  • 6September, 2017
  • 5December, 2018
  • 5March, 2019
  • 4January, 2019
  • 3October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
  • 1November, 2020
Available data
  • 2050bam
  • bigWig
  • 1811bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1137Homo sapiens
Biosample type
  • 599tissue
  • 293primary cell
  • 124in vitro differentiated cells
  • 116cell line
  • 5stem cell
Organ
  • 238pancreas
  • 160epithelium
  • 136liver
  • 106connective tissue
  • 103kidney
  • 73heart
  • 72vasculature
  • 71blood vessel
  • 62adipose tissue
  • 52artery
  • 52brain
  • 36eye
  • 28limb
  • 25musculature of body
  • 14blood
  • 14bodily fluid
  • 13bone element
  • 12skeleton
  • 11nerve
  • 10lung
  • 9spleen
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 939AMP
  • 137HPAP
  • 51T1D
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 196GRCh38
  • 196hg19
Lab
  • 788AMP-T2D consortium
  • 137Klaus Kaestner, Upenn
  • 106Kyle Gaulton, UCSD
  • 82Katalin Susztak, Upenn
  • 9Bing Ren, UCSD
  • 9Xin Sun, UCSD
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 65inconsistent ontology term
  • 33audit script error
  • 1inconsistent replicate
Audit category:
  • 3missing controlled_by
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1137 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
Capture-C
CRISPR genome editing followed by DNA sequencing
DNase-seq
HiChIP
DNAme array
whole genome sequencing assay
tissue
islet of Langerhans42657431
kidney775611
liver633111
subcutaneous abdominal adipose tissue353
coronary artery235
primary cell
pancreatic alpha cell622311
Langerhans cell48
pancreatic beta cell613161
naive thymus-derived CD4-positive, alpha-beta T cell2221
CD4-positive, alpha-beta memory T cell22
in vitro differentiated cells
embryonic stem cell381
adipocyte2051
neural progenitor cell810
pancreatic endoderm6
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
cell line
HepG2521221
EndoC_BH12171232
smooth muscle cell of the coronary artery28
Panc17
GM128786
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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