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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 132ATAC-seq
  • 90ChIP-seq
  • 49pCHi-C
  • 48total RNA-seq
  • 19RRBS
  • 14Hi-C
  • 12snATAC-seq
  • 10MeRIP-seq
  • 7WGBS
  • 6single cell RNA-seq
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 146DNA accessibility
  • 90DNA binding
  • 54Transcription
  • 27DNA methylation
  • 143D chromatin structure
Target of assay
  • 64control
  • 16transcription factor
  • 15histone
  • 15histone modification
  • 10broad histone mark
  • 8RNA binding protein
  • 5narrow histone mark
  • 5nucleotide modification
Date released
  • 58May, 2020
  • 50February, 2023
  • 39May, 2021
  • 35March, 2020
  • 31August, 2021
  • 25February, 2020
  • 25November, 2017
  • 24November, 2019
  • 21October, 2019
  • 16February, 2021
  • 16July, 2019
  • 10November, 2020
  • 7August, 2017
  • 7December, 2017
  • 6October, 2017
  • 5January, 2021
  • 5March, 2019
  • 3November, 2018
  • 3October, 2022
  • 2December, 2019
  • 2June, 2019
  • 2May, 2019
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2018
  • 1January, 2019
  • 1March, 2023
  • 1September, 2018
Available data
  • 1159bam
  • bigWig
  • 728bed narrowPeak
  • 630fastq
  • 529bigBed narrowPeak
  • 371tsv
  • 142tagAlign
  • 125bed broadPeak
  • 123bigBed broadPeak
  • 107bed bed3+
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 13bedpe bed3+
  • 12hic
  • 8txt
  • 7bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 3cool
  • 2csv
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 401Homo sapiens
Biosample type
  • 147tissue
  • 126primary cell
  • 68in vitro differentiated cells
  • 58cell line
  • 2stem cell
Organ
  • 81pancreas
  • 41liver
  • 31epithelium
  • 24brain
  • 23connective tissue
  • 20kidney
  • 12vasculature
  • 11blood vessel
  • 11heart
  • 9bone element
  • 9musculature of body
  • 8skeleton
  • 6blood
  • 6bodily fluid
  • 5adipose tissue
  • 5vein
  • 4limb
  • 3artery
  • 2eye
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 346AMP
  • 45T1D
  • 9HPAP
  • 1ITG
Genome assembly (visualization)
  • 99hg19
  • 50GRCh38
Lab
  • 305AMP-T2D consortium
  • 59Kyle Gaulton, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 9Klaus Kaestner, Upenn
  • 8Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 44inconsistent ontology term
  • 6audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
replication_type!
  • unreplicated
BIOSAMPLE
ASSAY

401 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
total RNA-seq
RRBS
Hi-C
snATAC-seq
MeRIP-seq
WGBS
single cell RNA-seq
STARR-seq
CRISPR genome editing followed by DNA sequencing
Capture-C
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans34281234
brain161
kidney114
liver2111
pancreas1112
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell22211
CD4-positive, alpha-beta memory T cell22
macrophage111
pancreatic alpha cell16
endothelial cell of umbilical vein41
in vitro differentiated cells
neural progenitor cell108
embryonic stem cell1115
adipocyte5111
cardiomyocytes (cardiac muscle cell)1222
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
cell line
HepG2125212
EndoC_BH163
Panc15
GM128784
HEK293T2
stem cell
hESC1
mesenchymal stem cell1
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