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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 48total RNA-seq
  • 47ATAC-seq
  • 38ChIP-seq
  • 28pCHi-C
  • 9Hi-C
  • 5snATAC-seq
  • 4MeRIP-seq
  • 4single cell RNA-seq
  • 2Capture-C
  • 2DNase-seq
  • 2snDrop-seq
  • 1DNAme array
Assay category
  • 54DNA accessibility
  • 52Transcription
  • 38DNA binding
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 17control
  • 12transcription factor
  • 11histone
  • 11histone modification
  • 7broad histone mark
  • 6RNA binding protein
  • 4narrow histone mark
  • 2nucleotide modification
Date released
  • 47February, 2023
  • 27March, 2020
  • 26May, 2021
  • 25February, 2020
  • 23August, 2021
  • 6October, 2017
  • 5March, 2019
  • 4February, 2021
  • 4November, 2020
  • 4October, 2019
  • 3October, 2022
  • 2August, 2017
  • 2January, 2021
  • 2May, 2020
  • 2May, 2022
  • 2September, 2017
  • 1April, 2019
  • 1December, 2017
  • 1June, 2019
  • 1March, 2023
  • 1November, 2019
  • 1September, 2018
Available data
  • 483bam
  • bigWig
  • 302tsv
  • 173bed narrowPeak
  • 129fastq
  • 116tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 190Homo sapiens
Biosample type
  • 107tissue
  • 45in vitro differentiated cells
  • 37primary cell
  • 1stem cell
Organ
  • 39pancreas
  • 22brain
  • 17connective tissue
  • 8bone element
  • 8heart
  • 8skeleton
  • 7epithelium
  • 6liver
  • 5adipose tissue
  • 5blood vessel
  • 5kidney
  • 5musculature of body
  • 5vasculature
  • 3limb
  • 2artery
  • 2blood
  • 2bodily fluid
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1eye
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 160AMP
  • 26T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 38hg19
  • 19GRCh38
Lab
  • 133AMP-T2D consortium
  • 40Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 15inconsistent ontology term
  • 4audit script error
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

190 results

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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
Hi-C
snATAC-seq
MeRIP-seq
single cell RNA-seq
Capture-C
DNase-seq
snDrop-seq
DNAme array
tissue
islet of Langerhans8152224
brain16
liver211
Ammon's horn11
acetabular part of hip bone11
in vitro differentiated cells
neural progenitor cell108
embryonic stem cell5111
adipocyte1111
immature adipocyte11
preadipocyte11
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell121
gabaergic neuron3
glutamatergic neuron3
microglial cell/astrocyte3
monocyte111
stem cell
mesenchymal stem cell1
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