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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 85ATAC-seq
  • 52ChIP-seq
  • 21pCHi-C
  • 19RRBS
  • 7WGBS
  • 7snATAC-seq
  • 6MeRIP-seq
  • 5Hi-C
  • 4STARR-seq
  • 3CRISPR genome editing followed by DNA sequencing
  • 2single cell RNA-seq
Assay category
  • 92DNA accessibility
  • 52DNA binding
  • 26DNA methylation
  • 53D chromatin structure
  • 2Transcription
Target of assay
  • 47control
  • 4histone
  • 4histone modification
  • 4transcription factor
  • 3broad histone mark
  • 3nucleotide modification
  • 2RNA binding protein
  • 1narrow histone mark
Date released
  • 56May, 2020
  • 25November, 2017
  • 23November, 2019
  • 17October, 2019
  • 16July, 2019
  • 13May, 2021
  • 12February, 2021
  • 8August, 2021
  • 8March, 2020
  • 6December, 2017
  • 6November, 2020
  • 5August, 2017
  • 3February, 2023
  • 3January, 2021
  • 3November, 2018
  • 2December, 2019
  • 2May, 2019
  • 1December, 2018
  • 1January, 2019
  • 1June, 2019
Available data
  • 676bam
  • bigWig
  • 555bed narrowPeak
  • 501fastq
  • 489bigBed narrowPeak
  • 99bed broadPeak
  • 99bigBed broadPeak
  • 69tsv
  • 39bed bed3+
  • 26tagAlign
  • 20bed bedMethyl
  • 20bigBed bedMethyl
  • 7bed bedgraph
  • 6bedpe bed3+
  • 5hdf5
  • 4hic
  • 4tar
  • 3txt
  • 2ibed
  • 1bed bed3
Organism
  • 211Homo sapiens
Biosample type
  • 89primary cell
  • 58cell line
  • 40tissue
  • 23in vitro differentiated cells
  • 1stem cell
Organ
  • 42pancreas
  • 35liver
  • 24epithelium
  • 15kidney
  • 7vasculature
  • 6blood vessel
  • 6connective tissue
  • 4blood
  • 4bodily fluid
  • 4musculature of body
  • 4vein
  • 3heart
  • 2brain
  • 1artery
  • 1bone element
  • 1bone marrow
  • 1embryo
  • 1eye
  • 1limb
  • 1mammary gland
  • 1pericardium
  • 1thymus
Project
  • 186AMP
  • 19T1D
  • 6HPAP
Genome assembly (visualization)
  • 61hg19
  • 31GRCh38
Lab
  • 172AMP-T2D consortium
  • 19Kyle Gaulton, UCSD
  • 6Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
  • 4Katalin Susztak, Upenn
Audit category:
  • 29inconsistent ontology term
  • 2audit script error
  • 1inconsistent replicate
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

211 results

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Clear Filters
ATAC-seq
ChIP-seq
pCHi-C
RRBS
WGBS
snATAC-seq
MeRIP-seq
Hi-C
STARR-seq
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
primary cell
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
macrophage11
pancreatic alpha cell6
endothelial cell of umbilical vein4
cell line
HepG2125212
EndoC_BH163
Panc15
GM128784
HEK293T2
tissue
islet of Langerhans1911
kidney14
pancreas12
skeletal muscle tissue2
brain1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)1122
Pancreatic progenitors (progenitor cell of endocrine pancreas)4
adipocyte4
cardiac precursors (cardiac muscle cell)11
lymphocyte of B lineage (iPSC)11
stem cell
hESC1
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