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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 133ChIP-seq
  • 37total RNA-seq
  • 28single cell RNA-seq
  • 26ATAC-seq
  • 11WGBS
Assay category
  • 133DNA binding
  • 65Transcription
  • 26DNA accessibility
  • 11DNA methylation
Target of assay
  • 104transcription factor
  • 26control
  • 18RNA binding protein
  • 3chromatin remodeller
Date released
  • 39November, 2017
  • 32December, 2018
  • 27October, 2018
  • 24May, 2022
  • 18September, 2020
  • 17April, 2018
  • 17November, 2018
  • 15February, 2018
  • 13August, 2017
  • 8January, 2019
  • 8July, 2018
  • 6February, 2021
  • 6October, 2017
  • 4December, 2017
  • 1June, 2018
Available data
  • 233fastq
  • 209bam
  • 159bigWig
  • 126bed narrowPeak
  • 102bigBed narrowPeak
  • 47tsv
  • 6txt
  • 3bed bedMethyl
  • 3bigBed bedMethyl
  • 2bed bed3+
  • 2zippedFastqFolder
Organism
  • 235Homo sapiens
Biosample type
  • 88cell line
  • 82tissue
  • 50primary cell
  • 15in vitro differentiated cells
Organ
  • 82pancreas
  • 49liver
  • 45blood
  • 45bodily fluid
  • 40epithelium
  • 26adipose tissue
  • 26connective tissue
  • 8spleen
  • 4embryo
Project
  • 211AMP
  • 24HPAP
Genome assembly (visualization)
  • 174hg19
  • 159GRCh38
Lab
  • 187AMP-T2D consortium
  • 24Klaus Kaestner, Upenn
  • 24Kyle Gaulton, UCSD
Audit category:
  • 7missing controlled_by
files.file_type!
  • cool
BIOSAMPLE
ASSAY

235 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
cell line
GM1287845
HepG243
tissue
islet of Langerhans618
body of pancreas134
subcutaneous adipose tissue81
spleen71
omental fat pad61
primary cell
pancreatic alpha cell1546
pancreatic beta cell14
mesenchymal cell4
pancreatic cell4
pancreatic delta cell3
in vitro differentiated cells
pancreatic endoderm4
definitive endodermal cell2
embryonic stem cell2
endocrine cell2
posterior foregut2
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