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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
23
ATAC-seq
5
WGBS
4
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
184
Transcription
27
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
675
bam
603
bigWig
465
fastq
422
bed narrowPeak
356
bigBed narrowPeak
165
tsv
82
tagAlign
61
bed broadPeak
61
bigBed broadPeak
8
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
754
Homo sapiens
Biosample type
370
cell line
361
tissue
15
in vitro differentiated cells
8
primary cell
Organ
928
pancreas
754
liver
661
connective tissue
489
adipose tissue
488
epithelium
266
heart
256
brain
223
vasculature
219
blood vessel
159
bone element
143
kidney
137
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
29
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
754
AMP
Genome assembly (visualization)
605
hg19
526
GRCh38
Lab
714
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
cool
month_released!
August, 2020
August, 2021
June, 2019
BIOSAMPLE
ASSAY
754 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
1
1
2
tissue
liver
145
167
20
3
2
1
1
1
1
1
right lobe of liver
10
3
1
1
2
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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