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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
45
ChIP-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
58
Transcription
52
DNA accessibility
45
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
9
control
1
RNA binding protein
1
transcription factor
Date released
60
February, 2021
47
October, 2019
35
February, 2023
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
122
bam
100
bigWig
87
bed narrowPeak
58
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
157
Homo sapiens
Biosample type
73
tissue
60
cell line
24
primary cell
Organ
927
pancreas
704
liver
662
connective tissue
517
epithelium
483
adipose tissue
387
heart
349
kidney
230
vasculature
224
blood vessel
168
brain
159
bone element
135
artery
122
limb
81
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
stomach
1
urinary bladder
Project
157
AMP
Genome assembly (visualization)
136
GRCh38
106
hg19
Lab
157
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
csv
tagAlign
organ_slims!
stomach
BIOSAMPLE
ASSAY
157 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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