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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
17
DNA binding
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
22
October, 2019
6
February, 2021
5
July, 2019
1
May, 2019
Available data
66
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
66
tissue
Organ
513
liver
327
pancreas
300
kidney
275
epithelium
128
heart
127
connective tissue
100
bone element
97
vasculature
92
blood vessel
73
brain
66
limb
63
artery
60
blood
60
bodily fluid
58
adipose tissue
54
musculature of body
53
eye
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
7
vein
1
pericardium
1
pituitary gland
1
skin of body
Project
66
AMP
Genome assembly (visualization)
45
GRCh38
44
hg19
Lab
66
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
csv
tsv
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
66 results
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DNase-seq
ChIP-seq
ATAC-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
1
tibial nerve
2
11
1
tibial artery
2
5
1
gastrocnemius medialis
4
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