Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 696ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 6WGBS
  • 5GRO-seq
  • 4RRBS
  • 3DNase-seq
  • 2FAIRE-seq
  • 1ATAC-seq
Assay category
  • 696DNA binding
  • 209Transcription
  • 10DNA methylation
  • 6DNA accessibility
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 179August, 2017
  • 90December, 2017
  • 76February, 2023
  • 48November, 2018
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • 8bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 919Homo sapiens
Biosample type
  • 324cell line
  • 284primary cell
  • 175tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 386liver
  • 257pancreas
  • 181epithelium
  • 74connective tissue
  • 27embryo
  • 20brain
  • 18adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
  • 2musculature of body
Project
  • 815AMP
  • 111HPAP
Genome assembly (visualization)
  • 691hg19
  • 639GRCh38
  • 5hg18
Lab
  • 815AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • csv
BIOSAMPLE
ASSAY

926 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
WGBS
GRO-seq
RRBS
DNase-seq
FAIRE-seq
ATAC-seq
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver5411
islet of Langerhans28611
body of pancreas20
pancreas1621
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego