Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
64
total RNA-seq
53
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
15
RRBS
8
Hi-C
2
FAIRE-seq
Assay category
119
Transcription
89
DNA accessibility
68
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
709
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
105
bigWig
82
bam
65
tsv
27
bed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
1
txt
Organism
284
Homo sapiens
Biosample type
165
primary cell
119
tissue
Organ
93
epithelium
86
pancreas
50
liver
25
heart
18
brain
18
connective tissue
12
adipose tissue
12
musculature of body
12
vasculature
11
blood vessel
11
kidney
5
limb
3
artery
2
pericardium
1
eye
Project
150
AMP
134
HPAP
Genome assembly (visualization)
112
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
110
AMP-T2D consortium
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
csv
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
284 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
RRBS
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 24 more…
tissue
liver
20
22
1
heart left ventricle
2
2
4
1
omental fat pad
4
1
right lobe of liver
2
1
2
subcutaneous adipose tissue
4
1
+ See 26 more…
See all biosamples
Download