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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
DNase-seq
Assay category
66
DNA binding
12
DNA accessibility
7
Transcription
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
June, 2019
7
May, 2019
6
February, 2021
July, 2019
3
February, 2020
Available data
81
bam
60
bed narrowPeak
58
bigWig
52
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
85
Homo sapiens
Biosample type
85
tissue
Organ
935
pancreas
778
liver
648
connective tissue
491
epithelium
478
adipose tissue
333
heart
257
kidney
238
brain
217
vasculature
214
blood vessel
159
bone element
136
artery
85
limb
69
blood
69
bodily fluid
53
eye
43
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
85
AMP
Genome assembly (visualization)
64
hg19
63
GRCh38
Lab
85
AMP-T2D consortium
files.file_type!
csv
lab.title!
Maike Sander, UCSD
month_released!
July, 2019
June, 2019
BIOSAMPLE
ASSAY
85 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
muscle of leg
7
distal epiphysis of femur
1
distal epiphysis of humerus
1
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