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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
Assay category
73
DNA binding
Target of assay
78
histone
78
histone modification
44
broad histone mark
40
transcription factor
35
control
33
narrow histone mark
10
RNA binding protein
2
chromatin remodeller
Date released
62
August, 2017
5
June, 2019
5
October, 2018
1
October, 2019
Available data
58
bigWig
57
bam
52
fastq
41
bed narrowPeak
11
bigBed narrowPeak
10
bed bed3+
7
tagAlign
1
bed broadPeak
Organism
73
Homo sapiens
Biosample type
38
in vitro differentiated cells
30
tissue
5
primary cell
Organ
398
liver
120
brain
92
pancreas
73
connective tissue
58
epithelium
57
heart
52
blood
52
bodily fluid
35
vasculature
33
blood vessel
29
adipose tissue
25
kidney
15
limb
13
musculature of body
11
artery
11
embryo
8
nerve
8
spleen
6
vein
4
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
73
AMP
Genome assembly (visualization)
58
hg19
57
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
files.file_type!
csv
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
in vitro differentiated cells
adipocyte
38
tissue
white adipose tissue
12
subcutaneous abdominal adipose tissue
11
omental fat pad
3
subcutaneous adipose tissue
2
adipose tissue
1
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primary cell
cardiac fibroblast
3
mesenchymal stem cell
2
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