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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
25
ChIP-seq
10
ATAC-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
25
DNA binding
12
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
64
February, 2021
February, 2023
21
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
91
bam
83
bigWig
58
tsv
37
bed narrowPeak
23
bigBed narrowPeak
4
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
95
Homo sapiens
Biosample type
64
cell line
29
tissue
2
primary cell
Organ
833
pancreas
680
liver
620
connective tissue
465
adipose tissue
424
epithelium
304
heart
257
kidney
224
brain
172
vasculature
169
blood vessel
151
bone element
95
artery
73
limb
63
blood
63
bodily fluid
49
musculature of body
32
nerve
30
embryo
23
eye
20
lung
20
vein
17
spleen
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
91
GRCh38
91
hg19
Lab
95
AMP-T2D consortium
files.file_type!
csv
month_released!
February, 2023
June, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
95 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
4
8
tissue
tibial artery
1
18
1
2
coronary artery
1
3
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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