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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
ATAC-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
Assay category
17
DNA binding
11
DNA accessibility
2
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
February, 2021
February, 2023
1
March, 2020
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
Organism
30
Homo sapiens
Biosample type
22
primary cell
8
tissue
Organ
879
pancreas
790
liver
670
connective tissue
490
adipose tissue
467
epithelium
357
heart
349
kidney
285
brain
201
vasculature
195
blood vessel
151
bone element
122
limb
106
artery
96
musculature of body
69
blood
69
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
25
hg19
20
GRCh38
Lab
30
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
csv
month_released!
February, 2023
September, 2017
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
proximal epiphysis
1
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