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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
133
ChIP-seq
15
total RNA-seq
8
ATAC-seq
Assay category
133
DNA binding
15
Transcription
8
DNA accessibility
Target of assay
59
histone
59
histone modification
42
transcription factor
33
broad histone mark
32
control
26
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
150
fastq
148
bam
117
bigWig
100
bed narrowPeak
56
bigBed narrowPeak
15
bed bed3+
15
tsv
14
tagAlign
4
bed broadPeak
Organism
156
Homo sapiens
Biosample type
82
in vitro differentiated cells
71
tissue
3
stem cell
Organ
63
liver
26
embryo
19
epithelium
16
brain
5
pancreas
1
adipose tissue
1
connective tissue
1
spleen
Project
156
AMP
Genome assembly (visualization)
122
GRCh38
121
hg19
Lab
155
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
13
inconsistent control read length
files.file_type!
csv
month_released!
July, 2018
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
18
4
hepatocyte
15
definitive endodermal cell
8
2
primitive gut cell
8
2
Posterior foregut
5
+ See 5 more…
tissue
liver
38
brain
15
right lobe of liver
10
body of pancreas
4
cerebellum (Hemisphere)
1
+ See 3 more…
stem cell
hESC
3
See all biosamples
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