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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
187
DNase-seq
104
ATAC-seq
81
ChIP-seq
1
Hi-C
1
pCHi-C
Assay category
291
DNA accessibility
190
Transcription
81
DNA binding
1
3D chromatin structure
Target of assay
46
histone
46
histone modification
38
narrow histone mark
31
control
8
broad histone mark
4
RNA binding protein
4
transcription factor
Date released
709
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
87
November, 2018
80
April, 2019
76
October, 2018
72
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
502
bam
470
bigWig
237
bed narrowPeak
210
bigBed narrowPeak
189
tsv
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
50
tagAlign
1
bedpe
1
fastq
1
hic
Organism
564
Homo sapiens
Biosample type
361
tissue
202
primary cell
1
cell line
Organ
196
liver
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
9
pancreas
7
eye
7
vasculature
5
blood vessel
2
artery
1
adipose tissue
Project
519
AMP
45
T1D
Genome assembly (visualization)
450
hg19
419
GRCh38
Lab
514
AMP-T2D consortium
45
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
34
inconsistent ontology term
files.file_type!
csv
BIOSAMPLE
ASSAY
564 results
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Clear Filters
total RNA-seq
DNase-seq
ATAC-seq
ChIP-seq
Hi-C
pCHi-C
tissue
liver
143
50
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
+ See 36 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
+ See 46 more…
cell line
HepG2
1
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