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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
289
ChIP-seq
72
DNase-seq
43
total RNA-seq
40
ATAC-seq
7
Hi-C
6
pCHi-C
4
small RNA-seq
3
RRBS
3
single cell RNA-seq
1
FAIRE-seq
1
WGBS
Assay category
289
DNA binding
113
DNA accessibility
50
Transcription
7
3D chromatin structure
4
DNA methylation
Target of assay
239
histone
239
histone modification
135
narrow histone mark
104
broad histone mark
49
control
4
RNA binding protein
4
transcription factor
Date released
176
October, 2019
91
November, 2017
69
June, 2019
35
May, 2019
32
February, 2023
24
July, 2019
16
February, 2020
16
October, 2017
6
February, 2021
2
March, 2020
2
November, 2018
Available data
364
bam
328
bed narrowPeak
319
bigWig
217
bigBed narrowPeak
118
tagAlign
87
bed broadPeak
78
bigBed broadPeak
75
bed bed3+
38
tsv
21
fastq
4
bed bedMethyl
4
bigBed bedMethyl
3
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
469
Homo sapiens
Biosample type
443
tissue
26
primary cell
Organ
946
pancreas
790
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
349
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
469
AMP
Genome assembly (visualization)
319
GRCh38
294
hg19
Lab
469
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
csv
organ_slims!
ovary
BIOSAMPLE
ASSAY
469 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
FAIRE-seq
WGBS
tissue
tibial nerve
35
2
5
1
brain
20
14
1
1
1
tibial artery
23
2
1
1
islet of Langerhans
3
14
2
4
layer of hippocampus
23
+ See 92 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
brain pericyte
1
1
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