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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
36
DNase-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
49
DNA binding
44
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
control
15
narrow histone mark
Date released
53
October, 2019
32
June, 2019
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
Available data
97
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
105
tissue
Organ
893
pancreas
682
liver
649
connective tissue
494
epithelium
467
adipose tissue
373
heart
337
kidney
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
105
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
105
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
csv
organ_slims!
brain
target.investigated_as!
control
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
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