Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
37
DNase-seq
29
ATAC-seq
14
total RNA-seq
6
Hi-C
4
RRBS
4
pCHi-C
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
67
DNA accessibility
44
DNA binding
15
Transcription
6
3D chromatin structure
5
DNA methylation
Target of assay
36
histone
36
histone modification
20
broad histone mark
16
narrow histone mark
7
control
1
RNA binding protein
1
transcription factor
Date released
50
June, 2019
27
February, 2023
24
August, 2017
21
October, 2019
7
July, 2019
7
May, 2019
2
March, 2020
2
May, 2022
1
January, 2018
Available data
93
bed narrowPeak
74
bigWig
64
bam
53
bigBed narrowPeak
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
15
tagAlign
tsv
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
fastq
2
hic
1
txt
Organism
141
Homo sapiens
Biosample type
124
tissue
17
primary cell
Organ
330
kidney
258
pancreas
239
brain
225
heart
211
epithelium
162
vasculature
159
blood vessel
157
liver
115
limb
108
connective tissue
101
bone element
85
musculature of body
83
artery
56
eye
46
adipose tissue
38
nerve
22
vein
19
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
141
AMP
Genome assembly (visualization)
99
hg19
53
GRCh38
Lab
141
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
141 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
RRBS
pCHi-C
WGBS
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
2
1
1
islet of Langerhans
2
1
14
4
muscle of leg
7
13
1
retina
3
15
muscle of arm
17
+ See 5 more…
primary cell
skeletal muscle satellite cell
8
retinal pigment epithelial cell
3
1
1
skeletal muscle cell
2
1
1
See all biosamples
Download