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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
76
ATAC-seq
43
ChIP-seq
25
total RNA-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
123
Transcription
82
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
581
February, 2021
399
May, 2021
341
May, 2020
314
October, 2019
262
August, 2021
218
June, 2019
175
May, 2022
124
August, 2017
122
February, 2023
120
May, 2019
118
July, 2018
108
July, 2019
82
November, 2017
80
April, 2019
64
March, 2020
61
November, 2019
47
September, 2023
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
November, 2020
16
October, 2018
15
May, 2023
10
December, 2019
6
October, 2017
5
April, 2018
5
March, 2023
4
March, 2019
3
January, 2018
3
October, 2022
1
August, 2022
0
January, 2019
Available data
128
tsv
127
bed narrowPeak
79
bam
73
bigWig
64
xls
txt
fastq
24
tagAlign
21
bigBed narrowPeak
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
261
Homo sapiens
Biosample type
172
tissue
44
cell line
42
in vitro differentiated cells
4
primary cell
Organ
92
heart
73
kidney
35
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
4
pancreas
2
artery
1
adipose tissue
Project
262
AMP
Genome assembly (visualization)
105
GRCh38
60
hg19
Lab
151
AMP-T2D consortium
71
Katalin Susztak, Upenn
36
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
fastq
txt
month_released!
September, 2017
BIOSAMPLE
ASSAY
262 results
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single cell RNA-seq
ATAC-seq
ChIP-seq
total RNA-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
18
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
21
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
4
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