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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
total RNA-seq
100
ChIP-seq
3
Hi-C
3
WGBS
3
pCHi-C
3
small RNA-seq
2
ATAC-seq
2
STARR-seq
1
DNase-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
168
Transcription
100
DNA binding
4
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
58
histone
58
histone modification
41
narrow histone mark
31
control
17
broad histone mark
11
transcription factor
1
RNA binding protein
Date released
194
May, 2020
35
August, 2021
26
August, 2017
10
July, 2019
7
October, 2019
5
December, 2019
3
February, 2021
3
March, 2020
June, 2019
1
February, 2020
Available data
679
bam
600
bigWig
fastq
419
bed narrowPeak
356
bigBed narrowPeak
174
tsv
86
tagAlign
61
bed broadPeak
61
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
284
Homo sapiens
Biosample type
238
tissue
34
cell line
12
primary cell
Organ
564
connective tissue
446
adipose tissue
444
pancreas
358
heart
284
liver
273
kidney
247
epithelium
235
brain
223
vasculature
222
blood vessel
158
bone element
139
artery
90
limb
54
eye
51
musculature of body
43
nerve
22
vein
20
lung
16
skeleton
10
embryo
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
blood
1
bodily fluid
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
284
AMP
Genome assembly (visualization)
213
hg19
186
GRCh38
Lab
253
AMP-T2D consortium
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
files.file_type!
fastq
lab.title!
Karen Mohlke, UNC
Kyle Gaulton, UCSD
month_released!
June, 2019
BIOSAMPLE
ASSAY
284 results
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Clear Filters
total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
ATAC-seq
STARR-seq
DNase-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
tissue
liver
147
78
1
2
1
1
1
right lobe of liver
3
1
2
1
cell line
HepG2
9
18
1
2
1
2
1
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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