Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
DNase-seq
10
total RNA-seq
Assay category
18
DNA accessibility
10
Transcription
Date released
18
June, 2019
8
August, 2021
2
May, 2021
Available data
54
bam
47
bigWig
32
bed narrowPeak
fastq
21
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
18
bigBed narrowPeak
14
tsv
Organism
28
Homo sapiens
Biosample type
18
tissue
8
cell line
2
in vitro differentiated cells
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
212
kidney
159
bone element
141
artery
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
28
AMP
Genome assembly (visualization)
28
GRCh38
28
hg19
Lab
28
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
lab.title!
Katalin Susztak, Upenn
organ_slims!
limb
BIOSAMPLE
ASSAY
28 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
total RNA-seq
tissue
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
cell line
H1-hESC
8
in vitro differentiated cells
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
Download