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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
116
ChIP-seq
30
DNase-seq
16
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
116
DNA binding
33
DNA accessibility
23
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
100
histone
100
histone modification
61
broad histone mark
39
narrow histone mark
19
control
Date released
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
2
March, 2020
1
February, 2023
Available data
160
bam
146
bigWig
128
bed narrowPeak
127
bigBed narrowPeak
80
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
25
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
179
Homo sapiens
Biosample type
167
tissue
12
primary cell
Organ
579
connective tissue
456
pancreas
446
adipose tissue
385
heart
324
kidney
319
liver
232
epithelium
183
vasculature
180
blood vessel
179
brain
159
bone element
115
artery
94
musculature of body
53
limb
40
eye
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
179
AMP
Genome assembly (visualization)
124
GRCh38
69
hg19
Lab
179
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
lab.title!
Maike Sander, UCSD
month_released!
October, 2019
organ_slims!
gonad
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
RRBS
pCHi-C
FAIRE-seq
tissue
layer of hippocampus
22
brain
6
12
1
1
caudate nucleus
15
1
1
temporal lobe
15
1
1
substantia nigra
15
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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