Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
102
ChIP-seq
55
DNase-seq
12
ATAC-seq
4
Hi-C
4
WGBS
3
small RNA-seq
1
RNA microarray
1
pCHi-C
Assay category
408
Transcription
102
DNA binding
67
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
80
histone
80
histone modification
54
broad histone mark
26
narrow histone mark
22
control
Date released
392
February, 2021
70
October, 2019
51
June, 2019
39
August, 2017
17
July, 2019
7
May, 2019
5
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2019
Available data
574
bam
534
bigWig
408
tsv
123
bed narrowPeak
112
bigBed narrowPeak
60
bed bed3+
57
bed broadPeak
56
bigBed broadPeak
fastq
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
586
Homo sapiens
Biosample type
585
tissue
2
primary cell
Organ
583
connective tissue
474
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
587
AMP
Genome assembly (visualization)
519
hg19
515
GRCh38
Lab
587
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
lab.title!
Maike Sander, UCSD
BIOSAMPLE
ASSAY
587 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
muscle of leg
7
13
1
+ See 18 more…
primary cell
mesenchymal stem cell of adipose
1
1
See all biosamples
Download