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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
70
DNA binding
44
DNA accessibility
4
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
17
control
Date released
73
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
February, 2020
1
March, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
124
Homo sapiens
Biosample type
124
tissue
Organ
581
connective tissue
464
pancreas
445
adipose tissue
390
heart
354
kidney
325
liver
261
epithelium
253
brain
227
vasculature
224
blood vessel
159
bone element
139
artery
119
limb
92
musculature of body
60
eye
42
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spleen
1
stomach
1
urinary bladder
Project
124
AMP
Genome assembly (visualization)
96
GRCh38
96
hg19
Lab
124
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
February, 2020
BIOSAMPLE
ASSAY
124 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
islet of Langerhans
5
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