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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
Assay category
43
DNA binding
41
DNA accessibility
6
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
Available data
88
bam
71
bed narrowPeak
70
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
95
Homo sapiens
Biosample type
95
tissue
Organ
565
connective tissue
456
pancreas
446
adipose tissue
357
heart
354
kidney
326
liver
264
brain
252
epithelium
195
vasculature
blood vessel
151
bone element
122
limb
106
artery
94
musculature of body
43
nerve
30
eye
22
vein
20
lung
18
ureter
10
embryo
9
blood
9
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
95
AMP
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
95
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
lab.title!
Struan F.A. Grant, CHOP
month_released!
February, 2023
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
95 results
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ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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