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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
5
WGBS
5
total RNA-seq
3
single cell RNA-seq
2
DNase-seq
2
RNA microarray
2
RRBS
Assay category
115
DNA binding
8
Transcription
7
DNA methylation
2
DNA accessibility
Target of assay
96
histone
96
histone modification
60
broad histone mark
36
narrow histone mark
19
control
Date released
670
February, 2021
314
October, 2019
296
May, 2020
218
June, 2019
164
May, 2021
151
August, 2021
124
August, 2017
120
May, 2019
118
July, 2018
108
July, 2019
103
February, 2023
82
November, 2017
80
April, 2019
63
March, 2020
61
November, 2019
25
February, 2020
16
October, 2018
10
December, 2019
6
November, 2020
6
October, 2017
5
April, 2018
3
January, 2018
2
May, 2022
1
August, 2022
1
May, 2023
1
October, 2022
Available data
287
bam
fastq
277
bigWig
142
bed narrowPeak
98
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
134
Homo sapiens
Biosample type
112
tissue
16
in vitro differentiated cells
6
primary cell
Organ
53
connective tissue
39
adipose tissue
31
liver
24
musculature of body
20
pancreas
6
epithelium
3
kidney
Project
134
AMP
Genome assembly (visualization)
26
hg19
5
GRCh38
Lab
134
AMP-T2D consortium
Audit category:
4
audit script error
2
inconsistent ontology term
files.file_type!
fastq
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
134 results
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Clear Filters
ChIP-seq
WGBS
total RNA-seq
single cell RNA-seq
DNase-seq
RNA microarray
RRBS
tissue
subcutaneous abdominal adipose tissue
36
3
liver
23
2
skeletal muscle tissue
22
2
islet of Langerhans
20
kidney
1
+ See 3 more…
in vitro differentiated cells
adipocyte
14
cardiomyocytes (cardiac muscle cell)
2
primary cell
hepatocyte
5
skeletal muscle myoblast
1
See all biosamples
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