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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
104
total RNA-seq
26
snATAC-seq
17
pCHi-C
9
single cell RNA-seq
5
ATAC-seq
1
Hi-C
Assay category
154
DNA binding
113
Transcription
31
DNA accessibility
1
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
February, 2023
19
April, 2020
16
January, 2021
1
March, 2023
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
1
hic
Organism
315
Homo sapiens
Biosample type
240
primary cell
47
in vitro differentiated cells
29
tissue
Organ
19
lung
9
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
213
T1D
83
AMP
19
LungMap
1
ITG
Genome assembly (visualization)
220
hg19
181
GRCh38
Lab
AMP-T2D consortium
296
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
lab.title!
AMP-T2D consortium
month_released!
February, 2023
BIOSAMPLE
ASSAY
316 results
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ChIP-seq
total RNA-seq
snATAC-seq
pCHi-C
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 32 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
lung
10
9
pancreas
1
4
islet of Langerhans
4
thymus
1
See all biosamples
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