Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
55
ATAC-seq
51
single cell RNA-seq
41
WGBS
39
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
Hi-C
2
HiChIP
Assay category
160
Transcription
154
DNA binding
94
DNA accessibility
41
DNA methylation
3
3D chromatin structure
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
134
May, 2022
45
May, 2020
23
February, 2023
18
September, 2020
16
January, 2021
3
October, 2022
Available data
230
bigWig
204
bam
fastq
153
zippedFastqFolder
132
bed narrowPeak
102
tsv
84
tagAlign
6
txt
3
bedpe bed3+
3
cool
3
hic
2
bed bed3+
Organism
474
Homo sapiens
Biosample type
394
primary cell
47
in vitro differentiated cells
28
tissue
5
cell line
Organ
110
pancreas
83
epithelium
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
236
T1D
155
HPAP
83
AMP
Genome assembly (visualization)
223
hg19
180
GRCh38
Lab
2749
AMP-T2D consortium
319
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
3
audit script error
files.file_type!
fastq
month_released!
April, 2020
BIOSAMPLE
ASSAY
474 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
Hi-C
HiChIP
primary cell
monocyte
84
53
1
Langerhans cell
51
21
pancreatic alpha cell
22
25
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic beta cell
13
16
1
+ See 35 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
5
11
6
pancreas
1
4
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
Download