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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
total RNA-seq
28
snATAC-seq
20
ChIP-seq
17
pCHi-C
16
ATAC-seq
9
single cell RNA-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
73
Transcription
44
DNA accessibility
20
DNA binding
Target of assay
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
101
May, 2021
May, 2020
23
February, 2023
19
April, 2020
16
January, 2021
Available data
75
bam
61
bigWig
51
tsv
fastq
18
bed narrowPeak
6
txt
2
bed bed3+
Organism
158
Homo sapiens
Biosample type
80
primary cell
47
tissue
27
in vitro differentiated cells
5
cell line
Organ
27
pancreas
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
107
T1D
33
AMP
19
LungMap
Genome assembly (visualization)
61
hg19
51
GRCh38
Lab
1865
AMP-T2D consortium
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
140
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
35
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
5
Patrick T. Ellinor, Broad
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
1
inconsistent ontology term
files.file_type!
fastq
month_released!
May, 2020
target.investigated_as!
histone
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
snATAC-seq
ChIP-seq
pCHi-C
ATAC-seq
single cell RNA-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
51
1
peripheral blood mononuclear cell
8
CD8-positive, alpha-beta T cell
2
3
1
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
5
6
11
lung
10
9
pancreas
1
4
thymus
1
in vitro differentiated cells
embryonic stem cell
5
17
5
cell line
EndoC_BH1
3
2
See all biosamples
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