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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
total RNA-seq
80
ChIP-seq
17
pCHi-C
16
snATAC-seq
5
ATAC-seq
Assay category
104
Transcription
80
DNA binding
21
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
161
May, 2021
45
May, 2020
February, 2023
16
January, 2021
Available data
160
bam
156
bigWig
96
tsv
68
bed narrowPeak
40
tagAlign
fastq
6
txt
2
bed bed3+
Organism
222
Homo sapiens
Biosample type
175
primary cell
37
in vitro differentiated cells
10
tissue
Organ
9
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
169
T1D
53
AMP
Genome assembly (visualization)
156
hg19
136
GRCh38
Lab
2358
AMP-T2D consortium
222
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
37
Bing Ren, UCSD
20
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
4
Struan F.A. Grant, CHOP
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
month_released!
February, 2023
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
222 results
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total RNA-seq
ChIP-seq
pCHi-C
snATAC-seq
ATAC-seq
primary cell
monocyte
53
40
1
CD8-positive, alpha-beta T cell
4
13
1
peripheral blood mononuclear cell
8
B cell
2
1
naive B cel
2
1
+ See 31 more…
in vitro differentiated cells
embryonic stem cell
5
27
5
tissue
pancreas
1
4
islet of Langerhans
4
thymus
1
See all biosamples
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