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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
154
ChIP-seq
109
total RNA-seq
17
pCHi-C
16
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
2
snATAC-seq
Assay category
154
DNA binding
109
Transcription
18
DNA accessibility
Target of assay
134
histone
134
histone modification
74
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
235
May, 2021
45
May, 2020
23
February, 2023
January, 2021
Available data
220
bigWig
204
bam
132
bed narrowPeak
96
tsv
84
tagAlign
fastq
6
txt
2
bed bed3+
Organism
303
Homo sapiens
Biosample type
231
primary cell
47
in vitro differentiated cells
20
tissue
5
cell line
Organ
19
pancreas
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
220
T1D
83
AMP
Genome assembly (visualization)
220
hg19
180
GRCh38
Lab
2744
AMP-T2D consortium
303
Kyle Gaulton, UCSD
155
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
38
Bing Ren, UCSD
19
Xin Sun, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
inconsistent ontology term
files.file_type!
fastq
month_released!
January, 2021
organ_slims!
gonad
BIOSAMPLE
ASSAY
303 results
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Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
snATAC-seq
primary cell
monocyte
84
53
1
CD8-positive, alpha-beta T cell
33
4
1
B cell
2
1
naive B cel
2
1
naive thymus-derived CD8-positive, alpha-beta T cell
2
1
+ See 30 more…
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
5
11
2
pancreas
1
thymus
1
cell line
EndoC_BH1
3
2
See all biosamples
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