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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
405
total RNA-seq
102
ChIP-seq
37
DNase-seq
12
ATAC-seq
4
Hi-C
4
WGBS
3
small RNA-seq
2
pCHi-C
Assay category
408
Transcription
102
DNA binding
49
DNA accessibility
4
3D chromatin structure
4
DNA methylation
Target of assay
80
histone
80
histone modification
54
broad histone mark
26
narrow histone mark
22
control
Date released
392
February, 2021
70
October, 2019
39
August, 2017
33
June, 2019
17
July, 2019
7
May, 2019
5
February, 2020
August, 2021
1
February, 2023
1
January, 2018
1
March, 2020
1
May, 2021
1
May, 2023
1
November, 2019
Available data
556
bam
516
bigWig
408
tsv
105
bed narrowPeak
94
bigBed narrowPeak
fastq
42
bed bed3+
39
bed broadPeak
38
bigBed broadPeak
8
tagAlign
3
bed bedMethyl
3
bigBed bedMethyl
1
bedpe bed3+
Organism
569
Homo sapiens
Biosample type
566
tissue
3
primary cell
Organ
578
connective tissue
471
pancreas
446
adipose tissue
301
heart
291
liver
265
brain
261
epithelium
224
kidney
224
vasculature
221
blood vessel
159
bone element
139
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
5
gonad
5
ovary
2
embryo
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
568
AMP
1
T1D
Genome assembly (visualization)
501
hg19
497
GRCh38
Lab
568
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
files.file_type!
fastq
month_released!
August, 2021
BIOSAMPLE
ASSAY
569 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
small RNA-seq
pCHi-C
tissue
adipose tissue
382
3
1
tibial nerve
5
35
2
1
subcutaneous abdominal adipose tissue
36
3
tibial artery
1
23
2
1
muscle of leg
7
13
1
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primary cell
mesenchymal stem cell of adipose
1
1
megakaryocyte
1
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