Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
4
Hi-C
4
single cell RNA-seq
4
total RNA-seq
3
DNase-seq
2
WGBS
1
ATAC-seq
1
pCHi-C
Assay category
45
DNA binding
8
Transcription
4
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
34
histone
34
histone modification
22
broad histone mark
12
narrow histone mark
9
control
2
RNA binding protein
2
transcription factor
Date released
45
May, 2019
October, 2019
8
July, 2019
4
August, 2021
4
March, 2020
3
June, 2019
February, 2020
Available data
58
bam
50
bigWig
42
bed narrowPeak
41
bigBed narrowPeak
9
tsv
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
fastq
2
bedpe bed3+
2
hdf5
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
Organism
64
Homo sapiens
Biosample type
59
tissue
5
primary cell
Organ
577
connective tissue
456
pancreas
444
adipose tissue
382
heart
324
kidney
318
liver
232
epithelium
180
vasculature
177
blood vessel
167
brain
159
bone element
artery
92
musculature of body
50
limb
39
eye
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
64
AMP
Genome assembly (visualization)
47
hg19
45
GRCh38
Lab
64
AMP-T2D consortium
files.file_type!
fastq
month_released!
February, 2020
October, 2019
organ_slims!
artery
BIOSAMPLE
ASSAY
64 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
Hi-C
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
pCHi-C
tissue
aorta
13
1
4
1
2
1
thoracic aorta
16
2
1
ascending aorta
16
1
1
primary cell
brain microvascular endothelial cell
1
1
endothelial cell of hepatic sinusoid
1
endothelial cell of umbilical vein
1
kidney capillary endothelial cell
1
Download