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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1273total RNA-seq
  • 1014ChIP-seq
  • 367ATAC-seq
  • 234single cell RNA-seq
  • 200DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 56pCHi-C
  • 55snATAC-seq
  • 33Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 10MeRIP-seq
  • 5STARR-seq
  • 4Capture-C
  • 3FAIRE-seq
  • 3snDrop-seq
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
  • 1MPRA
  • 1shRNA RNA-seq
  • 1siRNA RNA-seq
  • 1whole genome sequencing assay
Assay category
  • 1529Transcription
  • 1014DNA binding
  • 625DNA accessibility
  • 76DNA methylation
  • 333D chromatin structure
  • 1DNA sequencing
Target of assay
  • 787histone
  • 787histone modification
  • 404narrow histone mark
  • 383broad histone mark
  • 175control
  • 60transcription factor
  • 25RNA binding protein
  • 7recombinant protein
  • 5nucleotide modification
Date released
  • 670February, 2021
  • 399May, 2021
  • 341May, 2020
  • 319August, 2021
  • 314October, 2019
  • 218June, 2019
  • 176May, 2022
  • February, 2023
  • 124August, 2017
  • 120May, 2019
  • 118July, 2018
  • 108July, 2019
  • 82November, 2017
  • 80April, 2019
  • 64March, 2020
  • 61November, 2019
  • 47September, 2023
  • 40May, 2024
  • 25February, 2020
  • 19April, 2020
  • 18September, 2020
  • 16January, 2021
  • 16November, 2020
  • 16October, 2018
  • 15May, 2023
  • 10December, 2019
  • 6October, 2017
  • 5April, 2018
  • 5March, 2023
  • 4March, 2019
  • 4October, 2022
  • 3January, 2018
  • 1August, 2022
Available data
  • 3392bam
  • 3166bigWig
  • 1752bed narrowPeak
  • 1584tsv
  • fastq
  • 1042bigBed narrowPeak
  • 398tagAlign
  • 322bed broadPeak
  • 285bigBed broadPeak
  • 269bed bed3+
  • 154txt
  • 153zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 8csv
  • 5hdf5
  • 4bed bedgraph
  • 4tar
  • 3cool
  • 2bed bed3
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 3437Homo sapiens
Biosample type
  • 2305tissue
  • 667primary cell
  • 237in vitro differentiated cells
  • 229cell line
  • 6stem cell
Organ
  • 569connective tissue
  • 456pancreas
  • 446adipose tissue
  • 357heart
  • 354kidney
  • 326liver
  • 264brain
  • 252epithelium
  • 195vasculature
  • 192blood vessel
  • 151bone element
  • 122limb
  • 106artery
  • 94musculature of body
  • 43nerve
  • 30eye
  • 22vein
  • 20lung
  • 18ureter
  • 10embryo
  • 9blood
  • 9bodily fluid
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2997AMP
  • 221T1D
  • 155HPAP
  • 47KPMP
  • 19LungMap
  • 4community
  • 1ITG
Genome assembly (visualization)
  • 2160hg19
  • 2141GRCh38
Lab
  • 2646AMP-T2D consortium
  • 296Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 38Bing Ren, UCSD
  • 19Xin Sun, UCSD
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 4Anna Gloyn, Oxford
  • 4Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 331inconsistent ontology term
  • 15audit script error
  • 1inconsistent replicate
Audit category:
  • 1inconsistent assembly
files.file_type!
  • fastq
month_released!
  • February, 2023
BIOSAMPLE
ASSAY

3444 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
STARR-seq
Capture-C
FAIRE-seq
snDrop-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
...and 4 more
tissue
adipose tissue38221
islet of Langerhans190433745314
liver167782012111
kidney49277564136111
bone element84
primary cell
monocyte54851511
Langerhans cell5121
pancreatic alpha cell22251
CD8-positive, alpha-beta T cell43321
pancreatic beta cell13161
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53751
neural progenitor cell72110
adipocyte41471
cardiac precursors (cardiac muscle cell)1911
cell line
EndoC_BH1331519162
smooth muscle cell of the coronary artery5268
HepG29181212
Panc11311
H1-hESC8
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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