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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
217
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
Hi-C
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
2
RRBS
Assay category
217
DNA binding
37
DNA accessibility
24
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
192
histone
192
histone modification
119
narrow histone mark
73
broad histone mark
28
control
Date released
107
October, 2019
82
November, 2017
30
June, 2019
28
May, 2019
18
July, 2019
12
February, 2020
6
October, 2017
March, 2020
1
February, 2023
Available data
263
bam
237
bigWig
216
bed narrowPeak
140
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
24
tsv
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
1
tar
Organism
284
Homo sapiens
Biosample type
251
tissue
33
primary cell
Organ
581
connective tissue
461
pancreas
446
adipose tissue
386
heart
352
kidney
323
liver
263
brain
261
epithelium
226
vasculature
223
blood vessel
159
bone element
141
artery
122
limb
89
musculature of body
61
eye
43
nerve
21
vein
19
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
284
AMP
Genome assembly (visualization)
214
GRCh38
163
hg19
Lab
284
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
files.file_type!
fastq
month_released!
March, 2020
March, 2023
BIOSAMPLE
ASSAY
284 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
ATAC-seq
single cell RNA-seq
FAIRE-seq
RRBS
tissue
brain
11
12
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
+ See 76 more…
primary cell
endothelial cell of umbilical vein
17
2
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 3 more…
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