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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
45
ATAC-seq
29
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
1
RRBS
Assay category
59
Transcription
49
DNA accessibility
29
DNA binding
1
DNA methylation
Target of assay
18
histone
18
histone modification
14
broad histone mark
7
control
4
narrow histone mark
4
transcription factor
Date released
66
February, 2021
35
February, 2023
26
October, 2019
5
July, 2019
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
98
bam
83
bigWig
71
bed narrowPeak
59
tsv
22
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
138
Homo sapiens
Biosample type
69
tissue
66
cell line
3
primary cell
Organ
583
connective tissue
473
pancreas
447
adipose tissue
372
heart
349
kidney
326
liver
262
epithelium
237
brain
180
vasculature
177
blood vessel
159
bone element
136
artery
115
limb
87
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
138
AMP
Genome assembly (visualization)
126
GRCh38
92
hg19
Lab
138
AMP-T2D consortium
files.file_type!
fastq
month_released!
May, 2019
month_released!!
May, 2019
BIOSAMPLE
ASSAY
138 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
tissue
coronary artery
1
36
2
tibial artery
1
1
23
2
pulmonary artery
2
pericardium
1
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
pericardium fibroblast
1
smooth muscle cell of the coronary artery
1
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