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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
63
DNase-seq
23
total RNA-seq
9
Hi-C
6
small RNA-seq
5
RRBS
4
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
157
DNA binding
69
DNA accessibility
33
Transcription
9
3D chromatin structure
6
DNA methylation
Target of assay
140
histone
140
histone modification
98
narrow histone mark
42
broad histone mark
20
control
Date released
86
October, 2019
November, 2017
73
June, 2019
35
May, 2019
28
July, 2019
24
August, 2017
14
February, 2020
7
March, 2020
6
October, 2017
2
May, 2022
1
February, 2023
1
January, 2018
Available data
224
bigWig
222
bam
199
bed narrowPeak
111
bigBed narrowPeak
81
bed broadPeak
69
bed bed3+
67
tagAlign
65
bigBed broadPeak
35
tsv
fastq
6
bed bedMethyl
6
bigBed bedMethyl
3
hdf5
2
bedpe bed3+
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
277
Homo sapiens
Biosample type
251
tissue
26
primary cell
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
230
vasculature
227
blood vessel
183
brain
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
277
AMP
Genome assembly (visualization)
212
hg19
198
GRCh38
Lab
277
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
files.file_type!
fastq
month_released!
November, 2017
organ_slims!
mammary gland
BIOSAMPLE
ASSAY
277 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
small RNA-seq
RRBS
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
skeletal muscle tissue
22
1
1
2
1
1
1
brain
11
12
1
1
1
muscle of leg
7
13
1
muscle of arm
17
temporal lobe
15
1
1
+ See 83 more…
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
+ See 4 more…
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