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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ATAC-seq
8
snATAC-seq
4
total RNA-seq
1
pCHi-C
Assay category
21
DNA accessibility
4
Transcription
Date released
8
February, 2021
8
February, 2023
8
January, 2021
1
January, 2018
1
March, 2020
Available data
53
bam
50
bed narrowPeak
fastq
43
bigWig
42
bigBed narrowPeak
4
bed bed3
4
txt
1
tsv
Organism
26
Homo sapiens
Biosample type
17
tissue
8
primary cell
1
cell line
Organ
583
connective tissue
475
pancreas
447
adipose tissue
393
heart
354
kidney
326
liver
267
epithelium
265
brain
230
vasculature
227
blood vessel
159
bone element
141
artery
122
limb
94
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
18
AMP
8
T1D
Genome assembly (visualization)
13
hg19
8
GRCh38
Lab
18
AMP-T2D consortium
8
Kyle Gaulton, UCSD
files.file_type!
fastq
month_released!
November, 2018
BIOSAMPLE
ASSAY
26 results
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ATAC-seq
snATAC-seq
total RNA-seq
pCHi-C
tissue
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
distal epiphysis
1
+ See 8 more…
primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
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